PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05338
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 183aa    MW: 20566.9 Da    PI: 9.311
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05338genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08140162426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  +C ++ + GtCk+G +CkF H+
  PEQU_05338 140 QPCAYYTQHGTCKFGRTCKFDHP 162
                 69********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.88E-6135165IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-4136163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901136164IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6140162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-5140161IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MVLSQRKYVL DLLTETSMLE CKPAVSLIDQ KTMLNAEFVG VILIFWKSKK QSVVVRSTVE  60
AEYKVIALGV TKIMWLKALL IVNHHFNQLK RILHYINGTK SVGLPIHCST INIISYSDSD  120
WAGSPTDRKS TFGYYAFGAQ PCAYYTQHGT CKFGRTCKFD HPISTFGYNS ASLIDVPAAP  180
YPF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.27e-13C3H family protein